PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021624m
Common NameCICLE_v10021624mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 275aa    MW: 31078.3 Da    PI: 4.9833
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021624mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.5e-3056114259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  Ciclev10021624m  56 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDASMLIITYTSSHNHP 114
                      699***********************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3150116IPR003657WRKY domain
SuperFamilySSF1182905.49E-2653116IPR003657WRKY domain
SMARTSM007741.0E-3555115IPR003657WRKY domain
PROSITE profilePS5081131.19256116IPR003657WRKY domain
PfamPF031063.2E-2557114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDDSLSPKLD TQSEVSEPQA ETHQASSKRR KVTEKTVVKV KIGENPGKLK NEGPPSDFWS  60
WRKYGQKPIK GSPYPRGYYR CSTSKGCSAK KQVERCRTDA SMLIITYTSS HNHPCPDLHT  120
INLTKQSKET PQNHQPTGTE FQDHHPTSAP TQEQQLPQEE EKQNEPPIIT TPTAEDSNED  180
HFHYLQSPIR CPQDIIISQE DPFTGNLEKP NETLNLLLDE EPVSYQNLMA FSTPKSEEND  240
FFDELGELPS TSSVFTSFMR SNDLFDERIP VVPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-17561161574WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444508.10.0hypothetical protein CICLE_v10021624mg
TrEMBLV4TBR70.0V4TBR7_9R
STRINGPOPTR_0014s11490.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153711117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-34WRKY DNA-binding protein 35